PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM91303.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27077.3 Da    PI: 8.7006
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM91303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.53.6e-181350542
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +  r vtf kR+ng+lKKA+E S+LC+++ +vii+++
  OWM91303.1 13 KEKSRRVTFQKRKNGLLKKAKEFSILCGVDTCVIIYGT 50
                567799******************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGRLALEL IGKEKSRRVT FQKRKNGLLK KAKEFSILCG VDTCVIIYGT PVISDRPHVP  60
EIWPPNPDGV ARIINRYKNE VGTGRRSAKI RGAVVGLDEY FLERQRKLGT ELAKARTSAC  120
DDLIAHLSEE EEVILLKTLL GHKLEGAKKR LEAMKSEKEL AALLLLQDQS NNIVPTPLMV  180
GSSLLSESDH RGLIFHQPMP TYSFYVPADA AGLYCRHDPK PSDDQMLLPT LFQYAANDNP  240
DAC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-17M-type_MADS family protein