PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu000495.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LSD

Protein Properties

Length: 171aa MW: 17953 Da PI: 8.789

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu000495.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.3	3e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+L YPrGA++V+CalC++V Oeu000495.1 7 CGGCRTVLLYPRGATNVCCALCNAV 31 ************************9 PP
2	zf-LSD1	35.7	1.4e-11	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+ rGA+sVRC++C tV Oeu000495.1 46 CRGCRTLLMHARGATSVRCSCCRTV 70 9***********************9 PP
3	zf-LSD1	47.1	3.9e-15	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ Oeu000495.1 84 CGNCRTMLMYPAGAPSVKCAVCQY 107 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MQSQVVCGGC RTVLLYPRGA TNVCCALCNA VTAVPPPGME MAQLICRGCR TLLMHARGAT 60 SVRCSCCRTV NLVPASNHVA HVNCGNCRTM LMYPAGAPSV KCAVCQYITA VNMGESRIPI 120 PVQRPDGNST ASNLATSTAT SRTQNQTVVV QNPMTVDESG KLPRRLIGVT *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-59	LSD family protein