PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu001234.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family LBD
Protein Properties Length: 214aa    MW: 23138.1 Da    PI: 8.1578
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu001234.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.38.4e-4681071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k
  Oeu001234.1   8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAK 105
                  7*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  +e
  Oeu001234.1 106 SE 107
                  87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MASSSNSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELQPHQ  60
REDAVNSLAY EADMRLRDPV YGCVGVISLL QHQLRQLQID LSCAKSELSK YQNLGITGHG  120
IIAAANAANH HHQQNLGINL IGGGVGSRDH PFHHQFFPSN QQQVIRSFDG GNAYDAGNLL  180
AMNVSASIGQ LSQFQQSKAT GAADGMRTPV EPS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.38e-83LBD family protein