PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu003567.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LBD

Protein Properties

Length: 156aa MW: 16915.3 Da PI: 5.9264

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu003567.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.8	7.5e-14	2	54	44	96
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 ++++a+pe++r+ +++sl++eA r+ +Pv+Gavg++++++++++q+++e++l Oeu003567.1 2 SFISAVPENQRPSVFRSLLFEAAGRTVNPVNGAVGLLWSGNWHVCQEAVETVL 54 6899********************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MSFISAVPEN QRPSVFRSLL FEAAGRTVNP VNGAVGLLWS GNWHVCQEAV ETVLCGGALR 60 PIPELTSNDS VADDADPCLN SRSKLLKRRR FPDEPAKITQ LADLDISLIP CLQSKKNSPL 120 PEKRQLGSPM NSEESVTTVC GDQQASEPKL LNLFK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-35	LBD family protein