PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu005001.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

NF-YC

Protein Properties

Length: 229aa MW: 25442.7 Da PI: 4.7146

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu005001.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	175.9	4.1e-55	34	138	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 q+++fw++q ie+++df+nh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdi Oeu005001.1 34 QIHMFWNYQrqeIEQVNDFRNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 131 6899*998899********************************************************************************* PP NF-YC 96 vprdelk 102 vprd++k Oeu005001.1 132 VPRDDIK 138 **975 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MENIPHQMAA TASQPAMYPS QTPYPQLLQQ QQQQIHMFWN YQRQEIEQVN DFRNHQLPLA 60 RIKKIMKADE DVRMISAEAP ILFSKACELF ILELTIRSWL HAEENKRRTL QKNDIAAAIT 120 RTDIFDFLVD IVPRDDIKEE AATFGAILGP PGVATGATGV PYYYPPMGQP MMGQPAMPGM 180 DQGIYLQAPP HPPSQAWQSV WQTTPDDGSY ASGGGGTSSN QANLDGQD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	113	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	4e-77	NF-YC family protein