PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu006607.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 131aa    MW: 15257.8 Da    PI: 10.058
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu006607.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.71e-25956148
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifs +gklye
  Oeu006607.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYE 56
                 79*********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSA HGKLYEQASK  60
GYFKFSLILL SFFSLTMQSL IDRYMKYNRG AQAEQVIRDK EVVKQIQMYE YKYTYAKGYY  120
NFHDKESDAA *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.18e-38MIKC_MADS family protein