PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu009081.3

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LSD

Protein Properties

Length: 187aa MW: 19617.8 Da PI: 8.3255

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu009081.3	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.9	4e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL+YP GA++V+Ca+C+t+ Oeu009081.3 7 CNGCRSLLMYPSGATNVCCAVCNTI 31 ***********************97 PP
2	zf-LSD1	46.5	5.8e-15	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+ GA+sVRC++C+tV Oeu009081.3 46 CGGCRTLLMYTHGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	48	2e-15	83	107	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Oeu009081.3 83 CGNCRTTLMYPYGAPSVKCAVCQYV 107 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MQSQIVCNGC RSLLMYPSGA TNVCCAVCNT ITSVPPPVME MSQLICGGCR TLLMYTHGAT 60 SVRCSCCHTV NLAPAPNIAH VNCGNCRTTL MYPYGAPSVK CAVCQYVTNV NEVTTQISRT 120 TEMGNARVPI PMHRPNGAPT SASMPSSSAA LPNSQSQTVV VENPMSVDKS GKLVSNLVVG 180 VTMDKK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-68	LSD family protein