PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu012647.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LSD

Protein Properties

Length: 146aa MW: 15040.6 Da PI: 7.7408

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu012647.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.3	2.4e-13	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC++lL YP GA+sV+Ca+C++V Oeu012647.1 28 CSGCQNLLLYPVGATSVCCAVCNAV 52 ************************9 PP
2	zf-LSD1	41.8	1.8e-13	67	91	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+ rGA+sV+C++C+t+ Oeu012647.1 67 CGGCHTLLMHIRGATSVKCSCCHTI 91 ***********************97 PP
3	zf-LSD1	43.9	3.8e-14	105	129	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GApsV+Ca+C++V Oeu012647.1 105 CGNCRMLLMYQYGAPSVKCAVCNFV 129 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence
MPAPLAPYPM VSAPFTPPAN GAQSQLVCSG CQNLLLYPVG ATSVCCAVCN AVTSVPPPGT 60 EMAQLVCGGC HTLLMHIRGA TSVKCSCCHT INLALEANQV AHVNCGNCRM LLMYQYGAPS 120 VKCAVCNFVT SVLASANSTE QKFNS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	5e-79	LSD family protein