PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu017585.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24123.8 Da    PI: 10.0924
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu017585.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.23.7e-221763349
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 ie k   qvtfskRr g++KKA+EL++LC++e+a+++fs+ gk++ +
  Oeu017585.1 17 IEIKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPAGKVFSF 63
                 7778888*************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MAKKPSMGRQ KIKIAKIEIK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IVVFSPAGKV  60
FSFGHPNVEP IIERFIARNP SPNPNSFHIL EAHRNASVCE LNLQLGQILN ELEITKKRGE  120
TLDHMRKNSH NHYGWEGSFN KLGLHELKQL RDAMEELKKT VTTQATKFMS VVTNPSSYFV  180
STGTGIFDQY ESKPTNPVFV GPVNNNFGYC HGFF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-51M-type_MADS family protein