PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu021112.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 192aa MW: 21013.2 Da PI: 9.1577

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu021112.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.6e-07	2	16	13	27
S--TTTTT-SS-SSS CS zf-CCCH 13 GtCkyGdrCkFaHgp 27 G CkyG++Ck++H++ Oeu021112.1 2 GMCKYGASCKYHHPR 16 99***********96 PP
2	zf-CCCH	33.9	5.3e-11	38	61	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+++a++G+Ck+G +CkF+H+ Oeu021112.1 38 EKDCSYYAKYGQCKFGITCKFNHP 61 679********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MGMCKYGASC KYHHPRQGGG SSGSVTLNFD GYPLRLGEKD CSYYAKYGQC KFGITCKFNH 60 PHSSGLRMSV PARGPGSLPT PVTVPTPVVY PTPSVQSSQQ YGIFPGNWPV ARPAVFPPPY 120 VSGTYGHMLL PPAVVPGPGW TPYPVGVAEF VCFMWSFLEC PSDYKLWYRL QFVLWPPHTL 180 NSPLGRTQFM G*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-29	C3H family protein