PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu025302.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23014.5 Da    PI: 8.6174
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu025302.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF581.2e-18550449
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 + +sn  vtfskRr g++KKA+EL++L +ae+a+i+fs+  k++ +
  Oeu025302.1  5 SKESNLLVTFSKRRSGLFKKASELCTLYGAEIAIIVFSPGKKVFSF 50
                 6678999********************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MTKMSKESNL LVTFSKRRSG LFKKASELCT LYGAEIAIIV FSPGKKVFSF GHPCVESIVD  60
RYMMRNSTPS SSTMQIMEAH RNASVRELNM QLTNILSQWE SEKKCGEELT RIRKVSQGTC  120
WWEVPFNELR LEELEQLKGA MEELKKNVAN QVERLIVEAS NSLQPLLRAS SSGGNVGVDV  180
DVKIPGLGLS MTPHGYSFGY GHPYF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-55M-type_MADS family protein