PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu025658.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family LBD
Protein Properties Length: 209aa    MW: 22819.2 Da    PI: 7.9317
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu025658.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260971.9e-302102196
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l+p++      a+q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA  r+ +Pv+Gavg++++++++++q++++
  Oeu025658.1   2 SCNGCRVLRKGCSENCILRPCLqwiesSAAQGHATVFVAKFFGRAGLMSFISAVPENQRPAVFRSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQEAVQ 99 
                  6*********************9999888999***************************************************************999 PP

       DUF260  94 lal 96 
                  ++l
  Oeu025658.1 100 TVL 102
                  876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MSCNGCRVLR KGCSENCILR PCLQWIESSA AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PAVFRSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQEAVQT VLCGGALRPI PEFTNGDSVD  120
CTDMYNLQDP GLNSRSKVLN RHRLPDEPSK ISQLADLDIS LMPSVWSEKI RALPEKRRLG  180
SPMNSEESVT TVCGDQQASE PKLLNLFK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-76LBD family protein