PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu028405.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 90aa    MW: 10266 Da    PI: 10.47
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu028405.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-20858151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ien ++ q+tfskRrng++KKA+E+ v Cd++va + fs++g++  yss
  Oeu028405.1  8 KKIENVTKCQITFSKRRNGLIKKANEIAVCCDVDVAFLAFSPSGRISKYSS 58
                 78***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    
MGRKIDIKKI ENVTKCQITF SKRRNGLIKK ANEIAVCCDV DVAFLAFSPS GRISKYSSQR  60
RIEDVLHRYV NLSADKRLTY LSFFIHIIS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-30MIKC_MADS family protein