PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu029488.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11561.7 Da    PI: 10.1425
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu029488.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.73.1e-23959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ien    qvtfskR+  +lKKA+EL +LC+a+vaviifs tgklye++s
  Oeu029488.1  9 KKIENINSWQVTFSKRLGRLLKKAKELAILCAAQVAVIIFSGTGKLYEFAS 59
                 689**********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
MGRGKVEIKK IENINSWQVT FSKRLGRLLK KAKELAILCA AQVAVIIFSG TGKLYEFASS  60
WYVYFSCLFL YIFSCGNEIF SLLFFFNHAL SKSKFNIEGK I*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-26MIKC_MADS family protein