PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu030147.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 328aa MW: 35609.1 Da PI: 8.3203

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu030147.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35	2.3e-11	18	40	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++++rtGtC yG++C+++H+ Oeu030147.1 18 ADCPYYMRTGTCGYGSKCRYNHP 40 78********************8 PP
2	zf-CCCH	38.5	1.9e-12	60	84	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ Oeu030147.1 60 EPSCQYYLRTGTCKFGPSCKFNHPK 84 577********************96 PP
3	zf-CCCH	28.8	2.2e-09	105	130	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++ G+Ck+G +CkF H++ Oeu030147.1 105 GQQECSYYLQKGQCKFGRTCKFDHPE 130 6789********************96 PP
4	zf-CCCH	40.4	4.9e-13	256	282	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG CkyG++C+++H+p Oeu030147.1 256 PGEPDCKYYMRTGGCKYGSSCRYNHPP 282 5789*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MRGLNLRDGE YPERPGAADC PYYMRTGTCG YGSKCRYNHP HDRGISTGGV MRDYPERVGE 60 PSCQYYLRTG TCKFGPSCKF NHPKNAGGSL TNVPLNIYGY PLRPGQQECS YYLQKGQCKF 120 GRTCKFDHPE PAGLSMPDPA RTFYPTGQSL SAPSEQYDST STTYRVARPL LHGSYVPGAY 180 APMLLHPGVV PMTNWNTFSG PVSPAPSPGV QPSVGYRMSQ LSSSAPAFTG AYTQLPSSAS 240 PLSAGVTLEQ QLPERPGEPD CKYYMRTGGC KYGSSCRYNH PPNCVVSNTN CVLSPLGLPL 300 RPCALFWLGN SNSDVLVFDF LCPSHGD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-111	C3H family protein