PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu040497.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 510aa MW: 57256.9 Da PI: 7.8205

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu040497.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.8	1.5e-12	63	87	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG CkyG++CkF+H++ Oeu040497.1 63 QPECQYYLKTGSCKYGATCKFHHPR 87 799********************96 PP
2	zf-CCCH	35.5	1.7e-11	152	174	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++r+G+Ck+G++CkF+H++ Oeu040497.1 152 ECAYYMRNGQCKFGSTCKFHHPQ 174 6********************97 PP
3	zf-CCCH	38.2	2.4e-12	299	325	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ Oeu040497.1 299 PGQPECQFYMKTGDCKFGSVCKFHHPR 325 5789*********************96 PP
4	zf-CCCH	31.1	4.1e-10	414	439	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f++r G+Ck+G++CkF H++ Oeu040497.1 414 GEPPCIFYSRCGICKFGPSCKFDHPM 439 789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MNIRSREEME SGQYPVRESE PDCKYYIRTD PVVLLGLKDI SLITRGAIDA ARLNGEYPER 60 IGQPECQYYL KTGSCKYGAT CKFHHPRDKA GIAGRAALNV MGYPLRPDEW TSLFCMNLLP 120 EEVSIKCHPW VFTPGQLESL FNFFYCKQNE LECAYYMRNG QCKFGSTCKF HHPQPNNMMV 180 TLHGSSVYPP IHSPTTPGQL QFSLSKTTFI PSTRWQSPSG YAPLIMHQGV VSVPGWNTYK 240 SHPGTISSSE SQQSLAGNRD DHYIPHQSEA ENMGDQLHSS SMPMGYYSFH RENMFPERPG 300 QPECQFYMKT GDCKFGSVCK FHHPRERLIP VPDCVLSPIG LPLRPREFLG GGAGWGVNEF 360 TDSGLLRNMS FGYSSFRSCF DVIPWKLEIR KKSVNKREGG REAFCFYHPS WYQGEPPCIF 420 YSRCGICKFG PSCKFDHPME VLSHSPAASL PTDSPAVHRL LASSSGTGAL NFSSEGHKEV 480 GSTSNRIQYL VKNCSSEDAV QLTRLTSLE*

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MNIRSREEME SGQYPVRESE PDCKYYIRTD PVVLLGLKDI SLITRGAIDA ARLNGEYPER  60
IGQPECQYYL KTGSCKYGAT CKFHHPRDKA GIAGRAALNV MGYPLRPDEW TSLFCMNLLP  120
EEVSIKCHPW VFTPGQLESL FNFFYCKQNE LECAYYMRNG QCKFGSTCKF HHPQPNNMMV  180
TLHGSSVYPP IHSPTTPGQL QFSLSKTTFI PSTRWQSPSG YAPLIMHQGV VSVPGWNTYK  240
SHPGTISSSE SQQSLAGNRD DHYIPHQSEA ENMGDQLHSS SMPMGYYSFH RENMFPERPG  300
QPECQFYMKT GDCKFGSVCK FHHPRERLIP VPDCVLSPIG LPLRPREFLG GGAGWGVNEF  360
TDSGLLRNMS FGYSSFRSCF DVIPWKLEIR KKSVNKREGG REAFCFYHPS WYQGEPPCIF  420
YSRCGICKFG PSCKFDHPME VLSHSPAASL PTDSPAVHRL LASSSGTGAL NFSSEGHKEV  480
GSTSNRIQYL VKNCSSEDAV QLTRLTSLE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-105	C3H family protein