PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu040584.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LBD

Protein Properties

Length: 208aa MW: 22738.1 Da PI: 8.7646

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu040584.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.7	2.1e-29	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ +q ++ +v+k+FG++ ++++++a+p ++r++a++sl+yeA r+ +P++Gavg++++++++++q+++e Oeu040584.1 2 SCNGCRVLRKGCSENCILRPCLqwiesSIAQGYATVFVAKFFGRAGLMSFISAVPVNHRPAAFQSLLYEAAGRTVNPINGAVGLLSTGNWNVCQAAVE 99 6*******************8876444778999************************************************************* PP DUF260 94 lallke 99 ++l++ Oeu040584.1 100 TVLQGG 105 998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MSCNGCRVLR KGCSENCILR PCLQWIESSI AQGYATVFVA KFFGRAGLMS FISAVPVNHR 60 PAAFQSLLYE AAGRTVNPIN GAVGLLSTGN WNVCQAAVET VLQGGKLLPI SLDDSLECTA 120 DIYKLQNPSL NSRHKVQKRR RLPDELGKLM QEADLDLSLT SGFEWKTPSP FAEKRRIGSP 180 SMNSEESGTS TCENQLPSKR KLLNLFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	142	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-73	LBD family protein