PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu046510.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family C3H
Protein Properties Length: 246aa    MW: 25925.7 Da    PI: 9.1079
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu046510.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96e-12212237127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC +fa+ G C +G+rC+FaHg+
  Oeu046510.1 212 FKTKLCENFAK-GSCTFGERCHFAHGE 237
                  69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MLSFVLSFRN LLLCKIILYL FASTILRSSY LPDLSVNSPS GCPFGEGCHF LHYVPGGIKA  60
VTQMLGSNPA LPAAARSPAV PSSFPDGSSP LAVKTRRYAG DRLEPTPSNL GAAASFGASA  120
TAKISVDASL AGAIIGKGGV NSKQICRLTG AKLAVRDHES DANLRNIELE GTFDQIKEAS  180
QMVRELIVSV SSNLGPPKRN PVMQGQAPAS NFKTKLCENF AKGSCTFGER CHFAHGEEEL  240
RKSGI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-62C3H family protein