PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu048076.2

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 550aa MW: 60382.9 Da PI: 8.3924

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu048076.2	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.3	4.5e-12	25	51	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtGtC yG +C+F+H+p Oeu048076.2 25 PGEPDCIYYLRTGTCGYGTNCRFNHPP 51 5789*********************96 PP
2	zf-CCCH	19.2	2.1e-06	102	118	11	27
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 + GtCkyG +Ck++H++ Oeu048076.2 102 EIGTCKYGMTCKYHHPK 118 468************96 PP
3	zf-CCCH	30.9	4.6e-10	140	163	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tG C+yG CkF+H++ Oeu048076.2 140 KPCPYYMQTGLCQYGYVCKFHHPQ 163 69********************97 PP
4	zf-CCCH	35.7	1.4e-11	264	289	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Crff+ +G CkyG+ Ck++H++ Oeu048076.2 264 DQPECRFFMNNGSCKYGSDCKYHHPR 289 689*********************96 PP
5	zf-CCCH	30.5	6.4e-10	437	462	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ +G CkyG++CkF H++ Oeu048076.2 437 GQPVCEYYTLYGLCKYGPSCKFDHPM 462 6799********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MKSLKVESRE HKNGDTGPGS YPGRPGEPDC IYYLRTGTCG YGTNCRFNHP PNSGQSVQST 60 GELPERVGQP ECGAFKLEEA YSGFCRGFHA WSSVEMFFSR TEIGTCKYGM TCKYHHPKDR 120 RGDSSVVFNS LGLPMRQDAK PCPYYMQTGL CQYGYVCKFH HPQPISAANV PVAGHIVYGL 180 GGSVVVPSSG APSVGQLPES SLSKPTYGSS SLQSQRSFMP VVLSPAQGWN VYMGGINPVY 240 VTSGLGLPVF SGQLSASHLP ERPDQPECRF FMNNGSCKYG SDCKYHHPRE KILQSASNFI 300 GPLGLPLRPR TAAVPFPSYW FSHSCTQSLQ LTRSLKQFPN CITEYYRLDI SEEKLTNDGE 360 MFGKGIRVGG CGYFRGGSIK LQIRMEKGLR NNEISNVLTL EGSALVKPNI QAPPKNKQSR 420 DSMCECVGNR GGAWVSGQPV CEYYTLYGLC KYGPSCKFDH PMEGYSSTLP SPPIIHSPWL 480 SYQKTPSLVA LSETSSSESS KFTDWIRKGD TNHRNQDSNT RDLGDMPGRS DSRPHSSKAS 540 SEITHNESD*

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MKSLKVESRE HKNGDTGPGS YPGRPGEPDC IYYLRTGTCG YGTNCRFNHP PNSGQSVQST  60
GELPERVGQP ECGAFKLEEA YSGFCRGFHA WSSVEMFFSR TEIGTCKYGM TCKYHHPKDR  120
RGDSSVVFNS LGLPMRQDAK PCPYYMQTGL CQYGYVCKFH HPQPISAANV PVAGHIVYGL  180
GGSVVVPSSG APSVGQLPES SLSKPTYGSS SLQSQRSFMP VVLSPAQGWN VYMGGINPVY  240
VTSGLGLPVF SGQLSASHLP ERPDQPECRF FMNNGSCKYG SDCKYHHPRE KILQSASNFI  300
GPLGLPLRPR TAAVPFPSYW FSHSCTQSLQ LTRSLKQFPN CITEYYRLDI SEEKLTNDGE  360
MFGKGIRVGG CGYFRGGSIK LQIRMEKGLR NNEISNVLTL EGSALVKPNI QAPPKNKQSR  420
DSMCECVGNR GGAWVSGQPV CEYYTLYGLC KYGPSCKFDH PMEGYSSTLP SPPIIHSPWL  480
SYQKTPSLVA LSETSSSESS KFTDWIRKGD TNHRNQDSNT RDLGDMPGRS DSRPHSSKAS  540
SEITHNESD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32930.1	7e-70	C3H family protein