PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu048605.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

M-type_MADS

Protein Properties

Length: 533aa MW: 60700.8 Da PI: 4.2728

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu048605.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.1	4.6e-13	20	58	12	50
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +f +R+ i KK eELS+LC+++++ ii++++g++ +++ Oeu048605.1 20 SFLRRKDYIKKKTEELSILCNVKACAIIVGPDGTIETWP 58 89************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MENAPRNKNQ KTASSAIKKS FLRRKDYIKK KTEELSILCN VKACAIIVGP DGTIETWPES 60 RNDVQRVIEA YRNCPVDKKK REPPQELDRG GDDHSNKKQK LCVVSEGVKK TGFTDQDLLR 120 RIDAKLCEVR KKIQSIKSND KNSMDYTIAN SKEPSFFQET ASFEQSQIID NPIWFDTQLE 180 EIRGFEKNDQ NYMDYTIASS KEPSFFQETA SFGQSQIIDN SVCFDTKLEE VHGFEENDLF 240 DWSDVFNTRS ENPHLMVVGK EDNHELLATA PTPKSLDTYQ DYQPSTQAVN SLIPGSESMD 300 TFSMAYNGEF NQFAHTDLNS FISETASFEQ SQIIDNPIWF DTQLEEICGF EKNDQNYMDY 360 TIASSKEPSF FQETASFGQS QIIDNSVCFD TKLEEVHGFE ENDLFDWSDV FDTRSENPHL 420 MVVGKEDNHE LLATAPTPKS LDTYQDYQPS TQAVNSLTPG SESMDTFSMA YNGEFNQFAP 480 TDLNSFISGN ESVNSFTLPA NQCFKPNWNW FEDSAFLADL TSWHAAPMNL WT*

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MENAPRNKNQ KTASSAIKKS FLRRKDYIKK KTEELSILCN VKACAIIVGP DGTIETWPES  60
RNDVQRVIEA YRNCPVDKKK REPPQELDRG GDDHSNKKQK LCVVSEGVKK TGFTDQDLLR  120
RIDAKLCEVR KKIQSIKSND KNSMDYTIAN SKEPSFFQET ASFEQSQIID NPIWFDTQLE  180
EIRGFEKNDQ NYMDYTIASS KEPSFFQETA SFGQSQIIDN SVCFDTKLEE VHGFEENDLF  240
DWSDVFNTRS ENPHLMVVGK EDNHELLATA PTPKSLDTYQ DYQPSTQAVN SLIPGSESMD  300
TFSMAYNGEF NQFAHTDLNS FISETASFEQ SQIIDNPIWF DTQLEEICGF EKNDQNYMDY  360
TIASSKEPSF FQETASFGQS QIIDNSVCFD TKLEEVHGFE ENDLFDWSDV FDTRSENPHL  420
MVVGKEDNHE LLATAPTPKS LDTYQDYQPS TQAVNSLTPG SESMDTFSMA YNGEFNQFAP  480
TDLNSFISGN ESVNSFTLPA NQCFKPNWNW FEDSAFLADL TSWHAAPMNL WT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02235.1	2e-12	M-type_MADS family protein