PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu048608.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 368aa    MW: 41942.5 Da    PI: 4.6871
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu048608.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.8e-1320581250
                 HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 +f +R+  i KK eELS+LC+++++ ii++++g++ +++
  Oeu048608.1 20 SFLRRKDYIKKKTEELSILCNVKACAIIVGPDGTIETWP 58
                 89************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MENAPRNKNQ KTASSAIKKS FLRRKDYIKK KTEELSILCN VKACAIIVGP DGTIETWPES  60
RNDVQRVIEA YRNCPVDKKK REPPQELDRG GDDHSNKKQK LCVVSEGVKK TGFTDQDLLR  120
RIDAKLCEVR KKIQSIKSND QNSMDHTIAN SKEPSFFQET ASFEQSQIID NPIWFDTQLE  180
EIRGFEKNDQ NYMDYTIASS KEPSFFQETA SFGQSQIIDN SVCFDTKLEE VHGFEENDLF  240
DWSDVFDTRS ENPHLMVVGK EDNHELLATA PTPKSLDTYQ DYQPSTQAVN SLIPGSESMD  300
TFSMAYNGEF NQFAHTDLNS FISGNESVNS FTLPANQCFK PNWNWFEDSA FLADLTSWHA  360
APMNLWT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.12e-12M-type_MADS family protein