PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu048623.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family LBD
Protein Properties Length: 169aa    MW: 18422.7 Da    PI: 7.3368
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu048623.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.13.1e-4311109199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++++
  Oeu048623.1  11 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLHLQKELDATN 108
                  7*********************************************************************************************9987 PP

       DUF260  99 e 99 
                  +
  Oeu048623.1 109 A 109
                  6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MASSTSYSSP PCAACKFLRR KCLPGCIFAP YFPPEEPQKF ANVHKIFGAS NVSKLLNEIL  60
PHQREDAVNS LAYEAEARLK DPVYGCVGAI SVLQRQVLHL QKELDATNAD LMRYTGSEAS  120
YLNQMSAQFG RMGREGGSFN LNSGYPGTYS SRWNNDSNSP ENGGDGIM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.23e-69LBD family protein