PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu049286.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LBD

Protein Properties

Length: 192aa MW: 21020 Da PI: 6.0825

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu049286.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.1	1.8e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+kdCv+apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ r+rdPvyG+vg i+ lq+q++ql+ +la+++ Oeu049286.1 7 PCASCKLLRRRCTKDCVFAPYFPPDDPHKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANSRMRDPVYGCVGAISYLQNQVAQLQMQLAVAQ 104 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Oeu049286.1 105 AE 106 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MGSGSSPCAS CKLLRRRCTK DCVFAPYFPP DDPHKFAIVH KVFGASNISK MLQELPVHQR 60 ADAVSSLVYE ANSRMRDPVY GCVGAISYLQ NQVAQLQMQL AVAQAEILCI QMQQEPTNLQ 120 PQMVEPADEN CLLFGSNNLD HNLQQYLSFA SSSSSSSSMV QDSVKIESLC AVDPSGDQFV 180 PKRSPTYMFG M*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-64	LBD family protein