PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu049758.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 140aa    MW: 15764 Da    PI: 9.2875
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu049758.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF595.7e-192269249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +i+ k+  qv+fskRr+g++KKA E  +LC+++va++i s+ +k++++
  Oeu049758.1 22 KIDKKTSLQVSFSKRRKGLFKKAAETRILCGTDVAILIQSPGNKFFTF 69
                 6999*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    
MTASNGIPEK KTKGKRKIEI QKIDKKTSLQ VSFSKRRKGL FKKAAETRIL CGTDVAILIQ  60
SPGNKFFTFG EPSVESILNR CQFLDDAHNP VVEGRGKSER EFWWENENVE KMEFPELGAF  120
EEILTGLRDE VLNRASVSS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-24M-type_MADS family protein