PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu049927.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family LBD
Protein Properties Length: 187aa    MW: 20786.8 Da    PI: 6.8589
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu049927.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.3e-40321311100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +C+aCk+lrr+C+++Cvlapyfp ++p kf  +h+++Gasn++kll++lpe  r da+ss+vyeA+ar+rdPvyG++gvi++lq+q+++l+++la+++
  Oeu049927.1  32 PCSACKILRRRCVEKCVLAPYFPPSDPLKFTTAHRVYGASNIIKLLQELPEALRVDAVSSMVYEANARLRDPVYGSAGVISQLQNQVNELQQQLAMAQ 129
                  7***********************************************************************************************99 PP

       DUF260  99 ee 100
                  +e
  Oeu049927.1 130 AE 131
                  87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MEHCYGDATI TKITSSSSPS PIPPPPPPVV SPCSACKILR RRCVEKCVLA PYFPPSDPLK  60
FTTAHRVYGA SNIIKLLQEL PEALRVDAVS SMVYEANARL RDPVYGSAGV ISQLQNQVNE  120
LQQQLAMAQA EIVNKQSQQA NLMALMCMEK WHKIIPHQHH SSDNDYQTNM SFLDESLGSL  180
WEHVWT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-51LBD family protein