PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu052411.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family C3H
Protein Properties Length: 298aa    MW: 33590.3 Da    PI: 6.8768
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu052411.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.88.1e-087898526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                  C  f++ G+C+ Gd+C FaHg
  Oeu052411.1 78 VCEEFRK-GHCSKGDNCEFAHG 98
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MDSPKSADDG LFQRFLPYNN FDDDDADPYS SDRFRMYEFK VRKCTRSRSH DWTDCPFAHP  60
GEKARRRDPR GYHYSGTVCE EFRKGHCSKG DNCEFAHGVF ECWLHPMRYR TEACKDGKNC  120
KRKVCFFAHS TRQLRILSDN SSPPLISPVS IDLNHCCVHC HSMIASPTST LIGLSHLSSP  180
PFSPPISPVK TPEFSRRPLE SSALNEFSSG GLSYKDALTE LMGNLEAMNL TEGASSRGNL  240
FNLDPEQSQF LFSPSTRNPA GSNRFFNGEF SSRDFTEANK YNNESGPDFG WVNDLLT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-76C3H family protein