PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu052706.2

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LSD

Protein Properties

Length: 246aa MW: 26299.3 Da PI: 8.3962

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu052706.2	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.3	1e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YPrGA +++C+lC++V Oeu052706.2 7 CSGCRTTLLYPRGAANICCSLCNAV 31 ************************9 PP
2	zf-LSD1	39.8	7.2e-13	114	138	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ GA+sVRC++C+tV Oeu052706.2 114 CGGCRTLLMHAWGATSVRCSCCHTV 138 ************************9 PP
3	zf-LSD1	44.3	2.8e-14	152	175	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ Oeu052706.2 152 CGNCRTTLMYPAGAPSVKCAICHC 175 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MQGQLVCSGC RTTLLYPRGA ANICCSLCNA VTSVPLPAQW SDFEFALQWL SVRVPSGPLR 60 EKDRDIENEK FVIRMISDLQ VSSFTLSTEL KIRFKQLGRE SVSRPGMEMA RLICGGCRTL 120 LMHAWGATSV RCSCCHTVNL VPASNPVAHV SCGNCRTTLM YPAGAPSVKC AICHCITNVN 180 AYNTMSDTRV PAPVHRPGGN PPSASTPSTS TATAHSQNQT VVVQNPMTVD ESGKLVSNVV 240 VGVTT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	64	LREKDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	6e-46	LSD family protein