PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu053970.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LSD

Protein Properties

Length: 425aa MW: 45575.9 Da PI: 4.592

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu053970.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	32	2e-10	335	359	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr+lL YPrGA+ V+C+ C+ V Oeu053970.1 335 CGTCRKLLLYPRGAKWVQCPGCQEV 359 **********************965 PP
2	zf-LSD1	34.4	3.7e-11	373	397	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+Y GAp+V+C++C++V Oeu053970.1 373 CGGCAVLLMYQHGAPAVQCSSCHFV 397 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MANKPEIVQE IEDEEDGPPP GFQSIITQQA PQSNLPSGKA EGGDGSGGEE EGPPPGFHCM 60 NLPAPHSDME TRGKRNDFED DEDSPPPGWE FNTLSRALPS KPPSNTADLE MGGKQDSILD 120 GGDCPPPGWE YGTLSQALPA KPQSNTADIK MRGKQDGFED DGDGPPPGWE FHALSQALPS 180 QPPLNKADKK MDSNELHEDE DDGPPPGWET TFPHQVLPPY EPPMQPSLAV SSGREMGSKK 240 EIKNDVEGHP SGSRPESVPE QLSPPIPPPQ LLPSSAPPAD KELGGTVDIK IGGERPTSVL 300 YSQPLQPMTL PSQPLPPPVM SLPSGQSTEK AQLVCGTCRK LLLYPRGAKW VQCPGCQEVN 360 LVLEAYQIGQ VNCGGCAVLL MYQHGAPAVQ CSSCHFVTQI GAHNRRPPLS VQQAQRRRRA 420 NRGR*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MANKPEIVQE IEDEEDGPPP GFQSIITQQA PQSNLPSGKA EGGDGSGGEE EGPPPGFHCM  60
NLPAPHSDME TRGKRNDFED DEDSPPPGWE FNTLSRALPS KPPSNTADLE MGGKQDSILD  120
GGDCPPPGWE YGTLSQALPA KPQSNTADIK MRGKQDGFED DGDGPPPGWE FHALSQALPS  180
QPPLNKADKK MDSNELHEDE DDGPPPGWET TFPHQVLPPY EPPMQPSLAV SSGREMGSKK  240
EIKNDVEGHP SGSRPESVPE QLSPPIPPPQ LLPSSAPPAD KELGGTVDIK IGGERPTSVL  300
YSQPLQPMTL PSQPLPPPVM SLPSGQSTEK AQLVCGTCRK LLLYPRGAKW VQCPGCQEVN  360
LVLEAYQIGQ VNCGGCAVLL MYQHGAPAVQ CSSCHFVTQI GAHNRRPPLS VQQAQRRRRA  420
NRGR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	8e-33	LSD family protein