PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu054235.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

CO-like

Protein Properties

Length: 358aa MW: 39522.6 Da PI: 7.0321

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu054235.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.4	5.3e-07	26	65	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Ht 38 + C+ +++ + +fC + + ++C +C + H+ H+ Oeu054235.1 26 KPCDYCKSAAALIFCVTESAFMCMTCDAKVHNEdislkHE 65 68*****9*******************666777775 PP
2	zf-B_box	30.5	7.3e-10	66	112	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +++ ++++ C+ ++ lC C ++H+ H+++p+ Oeu054235.1 66 RLWTCEVCKQAPASFSCKADGAALCVVCDRNIHSAnplasrHDRTPI 112 5789*****************************66899999998886 PP
3	CCT	68.3	2.1e-23	282	325	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++ Oeu054235.1 282 REARVLRYKEKRKKRKFNKTIRYASRKAYAETRPRIKGRFAKRT 325 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MIQDGDVSAG AARAKCFPAG WNAAAKPCDY CKSAAALIFC VTESAFMCMT CDAKVHNEDI 60 SLKHERLWTC EVCKQAPASF SCKADGAALC VVCDRNIHSA NPLASRHDRT PIVLFYDTAE 120 SMMESASVAA TYLLPVKHLS STETKMENAT DNWITSNPVT SKLSEDMKFM ELLISNSDQF 180 LDFEYPISAD SVVPVQSIKP AVPTRMTEYS YENPFEIDFN KSNINSYNSS YTITTPSFSV 240 SSSSLDVGVV PDGSILSDTS FSFTLNTSIR GNEASHMVGM DREARVLRYK EKRKKRKFNK 300 TIRYASRKAY AETRPRIKGR FAKRTEFQSD TDRLSTFNSF SANLIADDAG FGAVPSF*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MIQDGDVSAG AARAKCFPAG WNAAAKPCDY CKSAAALIFC VTESAFMCMT CDAKVHNEDI  60
SLKHERLWTC EVCKQAPASF SCKADGAALC VVCDRNIHSA NPLASRHDRT PIVLFYDTAE  120
SMMESASVAA TYLLPVKHLS STETKMENAT DNWITSNPVT SKLSEDMKFM ELLISNSDQF  180
LDFEYPISAD SVVPVQSIKP AVPTRMTEYS YENPFEIDFN KSNINSYNSS YTITTPSFSV  240
SSSSLDVGVV PDGSILSDTS FSFTLNTSIR GNEASHMVGM DREARVLRYK EKRKKRKFNK  300
TIRYASRKAY AETRPRIKGR FAKRTEFQSD TDRLSTFNSF SANLIADDAG FGAVPSF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	6e-60	CO-like family protein