PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu055558.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21347.7 Da    PI: 9.442
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu055558.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.9e-151050242
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                  i n  +r  +f kR++gi+ K +EL++LCd++ ++ii+s 
  Oeu055558.1 10 YIVNGAKRRASFKKRKKGIMNKMNELCTLCDIQGCIIIYSA 50
                 5789999********************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MTRGKIKLKY IVNGAKRRAS FKKRKKGIMN KMNELCTLCD IQGCIIIYSA YEPQPTVWPS  60
PFDAQQIISR FRELPELEQT QRLYNQESYM IQRVQKSYKQ AEKLQRINRL TDMEILMHQC  120
VACLSSLQNV PLNDITEMGR LAEQNIQDIM ARMEELEKNQ AATLQMGGTS SNPPRDDAAG  180
PSFRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-30M-type_MADS family protein