PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu060675.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 167aa    MW: 19357.9 Da    PI: 10.3382
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu060675.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-17950142
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 k ien++ r+ +f kR+ngilKK +ELS+LC+++++ +i+s+
  Oeu060675.1  9 KYIENNTDRKSSFKKRKNGILKKVQELSILCGIDACAMIYSP 50
                 579*************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MTRRKIMLKY IENNTDRKSS FKKRKNGILK KVQELSILCG IDACAMIYSP YEAEPFVWPS  60
PLVTQQIISR FQALPEAEKT RKMFDQVSSI DQRIRKSRVR IQKLQRDNRI KDTEILMHQC  120
MAGFTSLQNV SLSHLIEMGC LADQKMRDIA IRMKELQTNG MVCICK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKIMLKYIENNTDRKSSFKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-36M-type_MADS family protein