PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu060945.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LBD

Protein Properties

Length: 230aa MW: 25277.1 Da PI: 5.9239

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu060945.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.3	3.1e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf +eq +++fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ l+a+la+l Oeu060945.1 7 PCGACKFLRRKCVRGCVFAPYFSHEQgAAHFAAIHKVFGASNVSKLLAHLPMSDRCEAAVTISYEAQARVQDPIYGCVSHIFALQQQVVDLQAQLASL 104 7***********************89*****************************************************************998 PP DUF260 98 kee 100 + + Oeu060945.1 105 RGQ 107 865 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MKGSGSPCGA CKFLRRKCVR GCVFAPYFSH EQGAAHFAAI HKVFGASNVS KLLAHLPMSD 60 RCEAAVTISY EAQARVQDPI YGCVSHIFAL QQQVVDLQAQ LASLRGQAAQ SILNSSKNGN 120 PNEKFYCGTN SFSRDVKSWF QSSQNQGLVP QLDVNSSSTN IREMASCYEN CTVNDLNRVG 180 NYENSALVEE NTSFGSMDSL EMQSNETEWP FQDDGDDLQS VTFRYVQHS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	4e-59	LBD family protein