PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu062053.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 389aa MW: 42962.6 Da PI: 8.7718

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu062053.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.1	2.2e-11	31	56	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Oeu062053.1 31 GEPDCSYYIRTGLCRFGSTCRFNHPP 56 6899********************97 PP
2	zf-CCCH	38.8	1.6e-12	77	101	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Oeu062053.1 77 QPECQYYLQTGTCKFGSTCKFHHPR 101 799********************96 PP
3	zf-CCCH	37.7	3.4e-12	124	147	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+Ck+G++CkF+H++ Oeu062053.1 124 VECAYYLRTGQCKFGSTCKFHHPQ 147 79********************97 PP
4	zf-CCCH	38.9	1.5e-12	266	292	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ Oeu062053.1 266 PGQPECQFYMKTGDCKFGAVCKFHHPR 292 5789*********************96 PP
5	zf-CCCH	35.3	2e-11	312	338	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++++G+Ck+G++CkF H++ Oeu062053.1 312 PGEAVCLFYSKYGICKFGPSCKFDHPM 338 57899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MTGQYHSDAL WQMNWRSREP TEPGPYPVRE GEPDCSYYIR TGLCRFGSTC RFNHPPNRKL 60 AIATARMKGE YPERIGQPEC QYYLQTGTCK FGSTCKFHHP RDKAGIAGKV ALNVLGYPLR 120 LNEVECAYYL RTGQCKFGST CKFHHPQPSN VMVSLRGSVY PPIHSPTTPG QLSFPFSRAS 180 FVPSPRWQSP SSYAPVIMPQ GVISVPGWNP YSAQLVSVSS SESQHPTAGN DPHQDEAASM 240 GSQFRSGSTP VDYYALQRDN EFPERPGQPE CQFYMKTGDC KFGAVCKFHH PRDRLIPIPD 300 CVLSPIGLPL RPGEAVCLFY SKYGICKFGP SCKFDHPMRV YTYNLAASSS GDAPEVRRFL 360 ASSSGTGVSS LPGKGLVEAS STNNRRLS*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MTGQYHSDAL WQMNWRSREP TEPGPYPVRE GEPDCSYYIR TGLCRFGSTC RFNHPPNRKL  60
AIATARMKGE YPERIGQPEC QYYLQTGTCK FGSTCKFHHP RDKAGIAGKV ALNVLGYPLR  120
LNEVECAYYL RTGQCKFGST CKFHHPQPSN VMVSLRGSVY PPIHSPTTPG QLSFPFSRAS  180
FVPSPRWQSP SSYAPVIMPQ GVISVPGWNP YSAQLVSVSS SESQHPTAGN DPHQDEAASM  240
GSQFRSGSTP VDYYALQRDN EFPERPGQPE CQFYMKTGDC KFGAVCKFHH PRDRLIPIPD  300
CVLSPIGLPL RPGEAVCLFY SKYGICKFGP SCKFDHPMRV YTYNLAASSS GDAPEVRRFL  360
ASSSGTGVSS LPGKGLVEAS STNNRRLS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-171	C3H family protein