PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu063150.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family LSD
Protein Properties Length: 123aa    MW: 12559.3 Da    PI: 8.511
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu063150.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD124.54.4e-084171225
      zf-LSD1 12 rGApsVRCalCdtV 25
                 rGA+sVRC++C+tV
  Oeu063150.1  4 RGATSVRCSCCQTV 17
                 8************9 PP
2zf-LSD148.21.8e-152951123
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                 Cg+Cr++L+YP+GApsV+Ca+C+
  Oeu063150.1 29 CGNCRIMLMYPAGAPSVKCAICQ 51
                 **********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    
MHARGATSVR CSCCQTVNLV PAPNHVVNCG NCRIMLMYPA GAPSVKCAIC QNITTVNVSN  60
QMGASRVPIP VQRPDGNSTS ASIPSTSPAA SHAQNQTVVV QNPSSVDESG KLVSNVVVGI  120
TT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.21e-36LSD family protein