PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu063806.2

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 260aa MW: 29809.6 Da PI: 9.0321

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu063806.2	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.3e-09	61	86	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +k elC f+r G C yGd+C++aH++ Oeu063806.2 61 FKSELCILFQR-GKCYYGDNCHYAHSM 86 699******.***********95 PP
2	zf-CCCH	17.1	9.7e-06	117	131	11	25
GTS--TTTTT-SS-S CS zf-CCCH 11 rtGtCkyGdrCkFaH 25 + C+yGd+C+F H Oeu063806.2 117 SGKGCPYGDKCQFLH 131 5568*********** PP
3	zf-CCCH	35.4	1.9e-11	170	195	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k++lC+ + ++G C+yG +C +aHg+ Oeu063806.2 170 KMKLCNKWEKFGSCPYGVNCVYAHGQ 195 899*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MDSVHENETR SVHGVNDASN QQFFNQSNAE FGHFKKPRFS EAMRNPRVYL TINRSKLDIP 60 FKSELCILFQ RGKCYYGDNC HYAHSMSDIR NQSFNGPANG YQRNTMNKWK KCFKFSSGKG 120 CPYGDKCQFL HERVGEYRES SAISIVNGAD QIECKSLNAG QEYKRLNFRK MKLCNKWEKF 180 GSCPYGVNCV YAHGQAELQR SGCITELECA NASNAKAVAM QSSDSEQKTA RELRLQGKRC 240 FTKWNVEKIN RIYADWIES*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	7e-30	C3H family protein