PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu063880.3
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family C3H
Protein Properties Length: 293aa    MW: 30727.8 Da    PI: 9.3619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu063880.3genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 k ++C  f+ t  C++G++C+F H
  Oeu063880.3 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                 7789******************** PP
2zf-CCCH27.65e-0997122227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt++C+ f     Ck+Gd+C+FaHg+
  Oeu063880.3  97 KTKICNKFNTAEGCKFGDKCHFAHGE 122
                  89**********************96 PP
3zf-CCCH35.51.6e-11259284127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ykt++C +f+  G C +GdrC+FaHg+
  Oeu063880.3 259 YKTKICENFSN-GSCTFGDRCHFAHGE 284
                  9**********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MDTRKRSRGE ATFNAYGGFK KPKPEMDSLS SGIGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VHGGYNAVAQ MMNLVPIPTR TTGPPPISNG TASTAVKTKI CNKFNTAEGC KFGDKCHFAH  120
GEWELGKPIA ASQEDPRAVG PIPGRIGGRM DPPIPAGSFG ASATAKISVD ASLASAIIGR  180
GGVNSKQICR QTGAKLAIRD HETDPNLRNI ELEGTFEQIK EASAMVRDLI SSIGFAGGPA  240
KPTGGSAKPV GGPAPRSNYK TKICENFSNG SCTFGDRCHF AHGEAELRQH GA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-89C3H family protein