PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000042.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 200aa MW: 23146.9 Da PI: 8.2516

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000042.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.1	5.4e-17	62	116	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ + +k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PCP000042.1 62 RKKLRRSKDQSAFLEESFKEHSTLNPKQKLVLAKQLNLRPRQVEVWFQNRRARTK 116 56667799*********************************************98 PP
2	HD-ZIP_I/II	119.6	1.7e-38	62	151	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+r sk+q+++LEesF+e+++L+p++K la++L+l+prqv+vWFqnrRARtk+ q+E+d+e+Lkr++++l+een+rL+ke +eL+ +l PCP000042.1 62 RKKLRRSKDQSAFLEESFKEHSTLNPKQKLVLAKQLNLRPRQVEVWFQNRRARTKLNQTEVDCEYLKRCCETLTEENRRLRKELQELK-TL 151 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MPGVVASAEE ADDTAAPLSS PNSTVSSFQM DFGMRSGGRS SKRDLEVDAD RASDDEENGS 60 TRKKLRRSKD QSAFLEESFK EHSTLNPKQK LVLAKQLNLR PRQVEVWFQN RRARTKLNQT 120 EVDCEYLKRC CETLTEENRR LRKELQELKT LKTSQPFYVQ AAAACHHTHH VPLMWARGHN 180 CLSQHLHHHQ QQPHEELIWY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	9e-76	HD-ZIP family protein