PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000128.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LSD

Protein Properties

Length: 141aa MW: 14733.2 Da PI: 7.9529

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000128.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.3	1.2e-13	33	57	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V PCP000128.1 33 CSGCRNLLLYPVGATSVCCAVCNAV 57 ************************9 PP
2	zf-LSD1	46.9	4.6e-15	72	96	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV PCP000128.1 72 CGGCHTLLMYIRGATSVQCSCCHTV 96 ************************9 PP
3	zf-LSD1	32	2e-10	110	130	1	21
zf-LSD1 1 CggCrtlLsYPrGApsVRCal 21 Cg+Cr lL+Y +GA+sV+Ca+ PCP000128.1 110 CGNCRMLLMYQYGARSVKCAV 130 *******************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence
MPVPLAPYPT PPPAPPPPYT SPPANGAQSQ LVCSGCRNLL LYPVGATSVC CAVCNAVTAV 60 PPPGTEMAQL VCGGCHTLLM YIRGATSVQC SCCHTVNLAL EANQVAHVNC GNCRMLLMYQ 120 YGARSVKCAV PANTPEQKFN N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-57	LSD family protein