PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000180.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 382aa MW: 42579.2 Da PI: 9.3632

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000180.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.9	7.9e-16	68	127	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g PCP000180.1 68 SRFRGVSRHRWTGRFEAHLWDkLSWNStlkKKgKQVYLGAYDEEESAARAYDLAALKYWG 127 789****************888899996448***********************98 PP
2	AP2	55.5	1.4e-17	170	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg++gt eeAa+a++ a+ +++g PCP000180.1 170 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYGTQEEAARAYDIAAIEYRG 221 89**99******988422...5***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MEFMMVKNEE IAGRRRLSTA DPEAQAARCV KRRRRDPPAV GGNSQSQQQL AQKPADQTSA 60 ATTVKRSSRF RGVSRHRWTG RFEAHLWDKL SWNSTLKKKG KQVYLGAYDE EESAARAYDL 120 AALKYWGAST FTNFPISDYD NEIKIMQSVT KEEYLASLRR KSSGFSRGVS KYRGVARHHH 180 NGRWEARIGR VLGNKYLYLG TYGTQEEAAR AYDIAAIEYR GINAMTNFDL SSYITWLKSR 240 ADDVIATPQV PEAVTKPKNA PFAASSYITT EESPFSLTNP FASDYVHSPR KQEVIGSSKS 300 SSPTALGLLL QSSVFRELVQ KNSSFSEDDS TDGEEPKNQP QADGDDEFGG IIYNGIGGSP 360 FVSSSNIDGD FTWNNFTSSI FA

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MEFMMVKNEE IAGRRRLSTA DPEAQAARCV KRRRRDPPAV GGNSQSQQQL AQKPADQTSA  60
ATTVKRSSRF RGVSRHRWTG RFEAHLWDKL SWNSTLKKKG KQVYLGAYDE EESAARAYDL  120
AALKYWGAST FTNFPISDYD NEIKIMQSVT KEEYLASLRR KSSGFSRGVS KYRGVARHHH  180
NGRWEARIGR VLGNKYLYLG TYGTQEEAAR AYDIAAIEYR GINAMTNFDL SSYITWLKSR  240
ADDVIATPQV PEAVTKPKNA PFAASSYITT EESPFSLTNP FASDYVHSPR KQEVIGSSKS  300
SSPTALGLLL QSSVFRELVQ KNSSFSEDDS TDGEEPKNQP QADGDDEFGG IIYNGIGGSP  360
FVSSSNIDGD FTWNNFTSSI FA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	35	RRRLSTADPEAQAARCVKRRRR
2	96	102	LKKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-92	AP2 family protein