PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000204.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 421aa MW: 45709.6 Da PI: 8.3689

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000204.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.7	2.9e-11	52	77	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p PCP000204.1 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77 5799********************97 PP
2	zf-CCCH	30.7	5.3e-10	82	101	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ PCP000204.1 82 YYLKTGTCKFGATCKFHHPR 101 8*****************96 PP
3	zf-CCCH	38.3	2.3e-12	123	147	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ PCP000204.1 123 EVECAYYLRTGQCKFGSTCKFHHPQ 147 689********************97 PP
4	zf-CCCH	38	2.8e-12	282	308	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ PCP000204.1 282 PGQPECQFYMKTGDCKFGAVCRFHHPR 308 5789*********************96 PP
5	zf-CCCH	40.8	3.6e-13	328	354	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ PCP000204.1 328 PGEPLCIFYSRYGICKFGPSCKFNHPM 354 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MDFDAGIPMS RAAAPVTDAR SLSPSLTQDA MWQMNLRSSE TMEAGPYPER TGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LYYLKTGTCK FGATCKFHHP RDKAGMAGRV ALNILGYPLR 120 PNEVECAYYL RTGQCKFGST CKFHHPQPTN MMVSVGASPV YPTVQSPTTP GQQSYAGGIT 180 NWSRASFIPS PRWQAQSSYA PLIVPQGVVS VPGWNAYSGQ LGSVSSPESQ QQTAGNSQMY 240 GTSHQGEPEN SGSQGGFSPY SSGSIPVGFY ALQRENVFPE RPGQPECQFY MKTGDCKFGA 300 VCRFHHPRER LIPAPDCVLS PMGLPLRPGE PLCIFYSRYG ICKFGPSCKF NHPMGIFTLN 360 LSASSSADAP ARRLLGSTSG AASLNLSSEG LVEAGSAKPR RLSLSEPRQM PSAEDSIDTE 420 E

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MDFDAGIPMS RAAAPVTDAR SLSPSLTQDA MWQMNLRSSE TMEAGPYPER TGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LYYLKTGTCK FGATCKFHHP RDKAGMAGRV ALNILGYPLR  120
PNEVECAYYL RTGQCKFGST CKFHHPQPTN MMVSVGASPV YPTVQSPTTP GQQSYAGGIT  180
NWSRASFIPS PRWQAQSSYA PLIVPQGVVS VPGWNAYSGQ LGSVSSPESQ QQTAGNSQMY  240
GTSHQGEPEN SGSQGGFSPY SSGSIPVGFY ALQRENVFPE RPGQPECQFY MKTGDCKFGA  300
VCRFHHPRER LIPAPDCVLS PMGLPLRPGE PLCIFYSRYG ICKFGPSCKF NHPMGIFTLN  360
LSASSSADAP ARRLLGSTSG AASLNLSSEG LVEAGSAKPR RLSLSEPRQM PSAEDSIDTE  420
E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-170	C3H family protein