PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000327.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 838aa MW: 94952.1 Da PI: 5.7917

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000327.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	7.2e-10	67	114	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ e+Er+RR+++N+ f+ Lr+llP++ + ++ a++ ++ Y+++Lq PCP000327.1 67 QSNFEAERKRRNKLNDVFHILRTLLPNN-----TGMDRASVIGDTIAYVSKLQ 114 5789***********************9.....67999999999999999998 PP
2	HLH	39.9	7.7e-13	583	627	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ErrRR+++N+++ Lr+l+P + Kl+ a+iL A+eY+k+Lq PCP000327.1 583 LIAERRRRKKLNDRLYALRSLVPIiS------KLDRASILGDAIEYVKQLQ 627 579*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence
MDLYLCFICF LVSSFVLVAF FLLTCAGTRG GMNMMMTLPS LRQMRGSLVR LKSWKLSEDQ 60 RNEKVPQSNF EAERKRRNKL NDVFHILRTL LPNNTGMDRA SVIGDTIAYV SKLQRQVKEL 120 AGELELNSNG GAKETSYICG NNSNLQSEFL RQMETIIANT PENEKMEPQV EVTELDVNEF 180 SVTVLCEHKP GGFVRLMEAL DTLGLEVTYA NVTSFKTLIF NVFKVQKNDS TGKIVQADHV 240 KDSLLEITRK LSMESIIRAA MMIMPYLIHR LRSLVGLKGW DCCVLWKLSE DQRFIELIDC 300 CCAGTEISQG DAGQNLPFPP VLACRDTILQ HPRTTSCDVL AQIPSSMPLD SGIYAETLIS 360 NQTSWLNFST NTFLSTLEET IGTRVVIPIP GGIIELLVTK QVFEDQHVID FVAAQYNISL 420 EEEALTNITG TRKMSEVGSK RFLDHLSFKT TSENLNLHPY DVSMERTSNS PMNFSQQFTN 480 YNSRNLTKNN IDISSAENGF QEMEAMQRSI TSERQQHMDM QQYMEALVPN IDQQEGNEKR 540 DSNTHEAEGQ AGDFMSDCSD QIDEDEDTKY QRRTGKRPQA KNLIAERRRR KKLNDRLYAL 600 RSLVPIISKL DRASILGDAI EYVKQLQKQA KQLQDELDDH AEDDAATNNV KSEIQSRSGV 660 NHIRPKTDDH QDDHKASNGS HFGTPGDCSV SKQSRDYSYT VHDHKTEQME PQVEVAQLDG 720 NQFFVKVFCE QKPGGFVRLM EALSSLSLEV TNANVTTFRC LVSNVFLVEK KDTDMVEADD 780 VRDSLLELTR NPSRPRSETA KAVENGVGLD NHHDHHHHQH LHNHHFSPLH LHHLPNEA

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence

MDLYLCFICF LVSSFVLVAF FLLTCAGTRG GMNMMMTLPS LRQMRGSLVR LKSWKLSEDQ  60
RNEKVPQSNF EAERKRRNKL NDVFHILRTL LPNNTGMDRA SVIGDTIAYV SKLQRQVKEL  120
AGELELNSNG GAKETSYICG NNSNLQSEFL RQMETIIANT PENEKMEPQV EVTELDVNEF  180
SVTVLCEHKP GGFVRLMEAL DTLGLEVTYA NVTSFKTLIF NVFKVQKNDS TGKIVQADHV  240
KDSLLEITRK LSMESIIRAA MMIMPYLIHR LRSLVGLKGW DCCVLWKLSE DQRFIELIDC  300
CCAGTEISQG DAGQNLPFPP VLACRDTILQ HPRTTSCDVL AQIPSSMPLD SGIYAETLIS  360
NQTSWLNFST NTFLSTLEET IGTRVVIPIP GGIIELLVTK QVFEDQHVID FVAAQYNISL  420
EEEALTNITG TRKMSEVGSK RFLDHLSFKT TSENLNLHPY DVSMERTSNS PMNFSQQFTN  480
YNSRNLTKNN IDISSAENGF QEMEAMQRSI TSERQQHMDM QQYMEALVPN IDQQEGNEKR  540
DSNTHEAEGQ AGDFMSDCSD QIDEDEDTKY QRRTGKRPQA KNLIAERRRR KKLNDRLYAL  600
RSLVPIISKL DRASILGDAI EYVKQLQKQA KQLQDELDDH AEDDAATNNV KSEIQSRSGV  660
NHIRPKTDDH QDDHKASNGS HFGTPGDCSV SKQSRDYSYT VHDHKTEQME PQVEVAQLDG  720
NQFFVKVFCE QKPGGFVRLM EALSSLSLEV TNANVTTFRC LVSNVFLVEK KDTDMVEADD  780
VRDSLLELTR NPSRPRSETA KAVENGVGLD NHHDHHHHQH LHNHHFSPLH LHHLPNEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	586	593	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-126	bHLH family protein