PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000328.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 608aa MW: 68369.5 Da PI: 4.9976

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000328.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.7e-12	347	390	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ Lr+l+P+ + K++Ka+iL A+e++k+Lq PCP000328.1 347 VAERKRRKKLNERLYHLRSLVPNiS------KMDKASILGDAIEFVKELQ 390 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MKIIMQNLID RLRPLVRLKG WDYCVLWKLS EDQRFIEWMD CCCSGTDGNT QTNGGQELLF 60 PVYPVLPCRD IMHHSRTNSC DLLAQLPSSL PLESGIYAQA LISNQIIWLN SANRDLSPTE 120 RDETRVLVPS GGGLIELFVS RDVSEDQQVI DFITAQCNIS HEQDILLSAS CNASTNTSFT 180 VDINNMSNDR RPKAFLVDDN GGNDHLNNNH SFQQQPVFPA MALDHNSNLP CDISVDQIRL 240 CSTSPMNFLQ NSNNNNVYNF DQGSHESLGE MGLQADTNAQ NLHNNIQVPE GIENIEQQVV 300 DDQDSIKHEG GRTADHSASD CSDQFDDDGG TNYRRRTGKK PQSKNLVAER KRRKKLNERL 360 YHLRSLVPNI SKMDKASILG DAIEFVKELQ RQEKELQEEL EQHSNDGGSK KRNSNNICGN 420 HTNFQPETLS QNGNTIANKQ ENDELPNGFH VGTAGDVGNI SKQKNQDSDS TNDRGQEMEP 480 QVGVTQLDGN EFFVSVFCEH KPGGFVRLME ALDSLGLEVT NANVTSFRSL VSNVFKVEKR 540 DTEIVQADHV RDSLLEITRN PSSKGWPDMI AKASGNVSPL DHFQHDQYQQ HHLHDYHAPS 600 YQLQHLYS

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MKIIMQNLID RLRPLVRLKG WDYCVLWKLS EDQRFIEWMD CCCSGTDGNT QTNGGQELLF  60
PVYPVLPCRD IMHHSRTNSC DLLAQLPSSL PLESGIYAQA LISNQIIWLN SANRDLSPTE  120
RDETRVLVPS GGGLIELFVS RDVSEDQQVI DFITAQCNIS HEQDILLSAS CNASTNTSFT  180
VDINNMSNDR RPKAFLVDDN GGNDHLNNNH SFQQQPVFPA MALDHNSNLP CDISVDQIRL  240
CSTSPMNFLQ NSNNNNVYNF DQGSHESLGE MGLQADTNAQ NLHNNIQVPE GIENIEQQVV  300
DDQDSIKHEG GRTADHSASD CSDQFDDDGG TNYRRRTGKK PQSKNLVAER KRRKKLNERL  360
YHLRSLVPNI SKMDKASILG DAIEFVKELQ RQEKELQEEL EQHSNDGGSK KRNSNNICGN  420
HTNFQPETLS QNGNTIANKQ ENDELPNGFH VGTAGDVGNI SKQKNQDSDS TNDRGQEMEP  480
QVGVTQLDGN EFFVSVFCEH KPGGFVRLME ALDSLGLEVT NANVTSFRSL VSNVFKVEKR  540
DTEIVQADHV RDSLLEITRN PSSKGWPDMI AKASGNVSPL DHFQHDQYQQ HHLHDYHAPS  600
YQLQHLYS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	355	RRRTGKKPQSKNLVAERKRRKK
2	339	354	KKPQSKNLVAERKRRK
3	349	356	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-127	bHLH family protein