PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000370.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 483aa MW: 53839.2 Da PI: 5.2089

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000370.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49	1.4e-15	285	325	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d++++lG++ W++Ia++++ gRt++++k++w+++ PCP000370.1 285 SEYEEKMVIDLHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 325 6779************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MWKARPWMEE EAHDCAVASG ACYVGVAWHG QLGSWAAVFK PLQGGSSVAD KHGLGMYWVS 60 PGHVPCTAMC LGSCVCMYVQ FFNPFAHCDS LVEALSLIGV RLSVITKLFQ IERFLDLSVI 120 SLLTLCHPTV CVCVSLFFKQ EMELSLVGLQ NAGKTSLLNA IATGGYSEDM IPTVGFNMRK 180 VTKGNVTIKV WDLGGQRRFR TMWERYCRGV SVIVYVVDAA DRDNIPIARS ELHDLLMKPS 240 LNGIPLLVLG NKIDKSEALS KQALVDQLLR WTNYLRPDLK RGLLSEYEEK MVIDLHAELG 300 NRWSKIASHL PGRTDNEIKN HWNTHIKKKL RKMGIDPLTH KPIANVNDQS QQSQRQKQEG 360 EEEQSCAAND KSEIDQNAPT QAKEEDSKNT GGDGLDKMEF LIDGFCIDEV PLMEFLIDGV 420 PSSSSNSSSS CSNSSSNFLE ELHLPDFEWP DCDYSNNSNN GSMGLWDDDF SSWGQEAWAY 480 GLL

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MWKARPWMEE EAHDCAVASG ACYVGVAWHG QLGSWAAVFK PLQGGSSVAD KHGLGMYWVS  60
PGHVPCTAMC LGSCVCMYVQ FFNPFAHCDS LVEALSLIGV RLSVITKLFQ IERFLDLSVI  120
SLLTLCHPTV CVCVSLFFKQ EMELSLVGLQ NAGKTSLLNA IATGGYSEDM IPTVGFNMRK  180
VTKGNVTIKV WDLGGQRRFR TMWERYCRGV SVIVYVVDAA DRDNIPIARS ELHDLLMKPS  240
LNGIPLLVLG NKIDKSEALS KQALVDQLLR WTNYLRPDLK RGLLSEYEEK MVIDLHAELG  300
NRWSKIASHL PGRTDNEIKN HWNTHIKKKL RKMGIDPLTH KPIANVNDQS QQSQRQKQEG  360
EEEQSCAAND KSEIDQNAPT QAKEEDSKNT GGDGLDKMEF LIDGFCIDEV PLMEFLIDGV  420
PSSSSNSSSS CSNSSSNFLE ELHLPDFEWP DCDYSNNSNN GSMGLWDDDF SSWGQEAWAY  480
GLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16600.1	1e-48	MYB family protein