PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000475.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Nin-like
Protein Properties Length: 264aa    MW: 30223.5 Da    PI: 4.8473
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000475.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.49e-26154202452
       RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   ++l++++kyF+ pi++AAkeL+v+lTvLKr+CR+++I+RWPhRk++sl
  PCP000475.1 154 PLELDEIQKYFDVPITQAAKELKVGLTVLKRRCRELNIMRWPHRKLRSL 202
                  6899*******************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MADSIFSQYL VPKIETDPHE FNSSIPYYQD LCQDQSAALE SLRLENFNQF TSPPLPLQYN  60
PNQLPQMGSQ DFEDLGIWDY ILDDAALPSP FDYEVVDENP LTTMAESIVC SNSVSGDSGD  120
VFRMLDWGME SWGKYDGEGM TKNGSCSKRM SAAPLELDEI QKYFDVPITQ AAKELKVGLT  180
VLKRRCRELN IMRWPHRKLR SLNALIENVK GMGLTNELRM LEEHKRLLEQ LPDMELPERA  240
KRLRQACFKA NYKKKRTLCL TAGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.15e-44Nin-like family protein