PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000689.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23490.8 Da    PI: 8.6276
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000689.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF282.8e-092667344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i+ +  r  tf +R++  + K +E+ +LC++ ++ +i+ +++
  PCP000689.1 26 ISHEPSRRATFKNRKASFFRKLNEITTLCGVIACAVIYNPSD 67
                 677778999*********************999988887654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MQLPEGTCCF FVFSTMAKNR TKRELISHEP SRRATFKNRK ASFFRKLNEI TTLCGVIACA  60
VIYNPSDTKT DVWPSPQEAF YVLEKFRNLS EERRGKFMVD QESFLKNNIS KLNRQLERAR  120
FKNQELDEKL LLIEYLEGKN FLDPGRLESL NGLDQQLDKR IDFITNRIEF LEGLRRNQVD  180
AELDSDGMVV RGIKGGVVGD NQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-27M-type_MADS family protein