PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000706.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family RAV
Protein Properties Length: 321aa    MW: 36832 Da    PI: 8.6684
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000706.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91.1e-123078155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGV   + +grW A+I++      ++r++lg+f  +eeAak ++ a +k++g
  PCP000706.1 30 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAKTYDIALLKFRG 78
                 78****9888.8*********3.....5************************997 PP
2B396.51.7e-30161264199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkke....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f+kv tpsdv++++r+v+pk+ ae+h    +        +++ l +ede+g++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD+v F+++ r+++
  PCP000706.1 161 FEKVATPSDVGRLNRMVIPKQQAEKHfqvhQ---SvelcKGVLLNFEDEEGNVWRFRYCYWSSSQSYVLTKGWTRFVKEKKLKAGDVVRFQRSVREDK 255
                  89************************87662...133458899************************************************9988999 PP

                  ..EEEEE-S CS
           B3  91 elvvkvfrk 99 
                  +l++  + +
  PCP000706.1 256 KLFIECRPR 264
                  999987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MDVMDCLNES TSDSSNNGVK DASSNKLPSS RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN  60
EEEEAAKTYD IALLKFRGLD AITNFCQSQI KPYIEDGNEA IFLESHSKAE IVDMLRKHSY  120
VNELEMYKHK LLNAGVRDGG RKRSKCHVDP IDACYERELL FEKVATPSDV GRLNRMVIPK  180
QQAEKHFQVH QSVELCKGVL LNFEDEEGNV WRFRYCYWSS SQSYVLTKGW TRFVKEKKLK  240
AGDVVRFQRS VREDKKLFIE CRPRNVDSLG FREMPAGRVA EPSAAVQDDG VVRLFGVNIM  300
KTCKSCIVDN SRCWRLGASL R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-106RAV family protein