PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000821.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 390aa    MW: 42602.7 Da    PI: 7.5002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000821.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.3e-052733111255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  PCP000821.1 273 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 311
                  7788899*********998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    
MVPDLGFHWL TNITSDHQSA HDLANIKEEL SSSSSLDHHS SFPKLTEMLT AAVSSSSIEH  60
DQYFQFMKNE QKDQMVMNDL SEKLLLKTLS SGCQMNSTFN APHHHQISPS ARDHHQFYSN  120
DHHHLLHNSN LMGGVPPAMP SRSAGHFSQI YPSINVSNLN RSLSSSTLSS SSLDMNLQAM  180
DLLGASARFS TGDGSSFSTQ PNDSHDTCGL YKERQNSFGT LEQMHQGKVS SFDNEITEVK  240
RPGSLIEPKA TQAAAPKKSR FESRTSCPPF KVRKEKLGDR IAALQQLVAP FGKTDTASVL  300
MEAIGYIKFL QNQVETLSVP YMKSSRNKTS KTILQGGMAE INGNGETRDL RSRGLCLVPL  360
SCMSYVTGDV RGGGGGCGNV WPTTNFGGGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-56bHLH family protein