PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000859.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 169aa MW: 18982.6 Da PI: 6.2195

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000859.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.9	5e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+kdC++apyfp+++p+kf +vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++ PCP000859.1 6 PCASCKLLRRRCTKDCIFAPYFPSDDPHKFVIVHKVFGASNVSKMLQELPAHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSELQMQLAVVQ 103 7***********************************************************************************************99 PP DUF260 99 ee 100 +e PCP000859.1 104 AE 105 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MAGTSPCASC KLLRRRCTKD CIFAPYFPSD DPHKFVIVHK VFGASNVSKM LQELPAHQRA 60 DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSELQMQLA VVQAEILCTQ MQHEPMVPTP 120 QQIMDDPDDQ KSYFLQNNNL AQYLSFPSSS NVIHDSLQRE NIFGHDMVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-77	LBD family protein