PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001120.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 250aa    MW: 27160.8 Da    PI: 8.4108
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001120.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.61.3e-302103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+++e
  PCP001120.1   2 SCNGCRVLRKGCSDTCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTINPVNGAVGLLWTGNWHVCQAAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  PCP001120.1 100 TVLR 103
                  8876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MSCNGCRVLR KGCSDTCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR  60
PVLFQSLLFE ACGRTINPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPI PELLGGASTP  120
DEASEADVGG VTISTDMWRL RDLSHNSGSS SRFTSSRSAR ASSPKRKRSA AADESSTKLL  180
QLQQHADLDL RLTPTPSFKP KPKPETRRPG TPSMNSDESG VTTCFESGFE DQHPYSYAVG  240
TERKLLNLFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-78LBD family protein