PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001197.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 306aa    MW: 34013.6 Da    PI: 6.7161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001197.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08177217954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  PCP001197.1 177 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 217
                  699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MDINIDYASK LSLNSSGGQD LNHDHVSMED PILPHEISSS FEYSSLWPNF PLHLQGHHQT  60
PSSSSTHHQY VPSPLNIHDH DQLIIDHHHQ HRHHHHAHQV LLAAAAGNNN NTLMELDDHE  120
DDQDQASVAT GEEELGAMKE MMYRIAAMQP VDIDPATIRK PKRRNVRISD DPQSVAARHR  180
RERISEKIRI LQRLVPGGTK MDTASMLDEA IRYVKFLKRQ IRLLQSSSSS SSNVKNISID  240
GHHHQNDQHH PAAAPAAAAH DQCNTNIING PSTSVGVPTA GVGLPLEWPP QHGSTASSSF  300
TRHPDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-47bHLH family protein